space ranger aligned visium hd data Search Results


space ranger software  (10X Genomics)
86
10X Genomics space ranger software
Space Ranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/pmc11078125-702-12-17?v=10X+Genomics
Average 86 stars, based on 1 article reviews
space ranger software - by Bioz Stars, 2026-07
86/100 stars
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visium space ranger software  (10X Genomics)
86
10X Genomics visium space ranger software
Visium Space Ranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/pmc09154247-32-39-37?v=10X+Genomics
Average 86 stars, based on 1 article reviews
visium space ranger software - by Bioz Stars, 2026-07
86/100 stars
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gse117556 human lymph node visium dataset  (10X Genomics)
86
10X Genomics gse117556 human lymph node visium dataset
Gse117556 Human Lymph Node Visium Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/pm34597589-270-79-88?v=10X+Genomics
Average 86 stars, based on 1 article reviews
gse117556 human lymph node visium dataset - by Bioz Stars, 2026-07
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visium hd mouse brain dataset  (10X Genomics)
86
10X Genomics visium hd mouse brain dataset
(a) sST: <t>Visium</t> <t>HD</t> mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).
Visium Hd Mouse Brain Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/bio_rxiv__64898__2026__05__01__722104-203-1-14?v=10X+Genomics
Average 86 stars, based on 1 article reviews
visium hd mouse brain dataset - by Bioz Stars, 2026-07
86/100 stars
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human lymph node visium dataset  (10X Genomics)
86
10X Genomics human lymph node visium dataset
(a) sST: <t>Visium</t> <t>HD</t> mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).
Human Lymph Node Visium Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/pmc09205168-1007-0-9?v=10X+Genomics
Average 86 stars, based on 1 article reviews
human lymph node visium dataset - by Bioz Stars, 2026-07
86/100 stars
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visium human breast cancer dataset  (10X Genomics)
86
10X Genomics visium human breast cancer dataset
(a) sST: <t>Visium</t> <t>HD</t> mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).
Visium Human Breast Cancer Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/bio_rxiv__64898__2026__05__01__722104-202-1-21?v=10X+Genomics
Average 86 stars, based on 1 article reviews
visium human breast cancer dataset - by Bioz Stars, 2026-07
86/100 stars
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space ranger aligned visium hd data  (10X Genomics)
86
10X Genomics space ranger aligned visium hd data
(a) sST: <t>Visium</t> <t>HD</t> mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).
Space Ranger Aligned Visium Hd Data, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+aligned+visium+hd+data/bio_rxiv__64898__2026__05__05__723027-301-1-9?v=10X+Genomics
Average 86 stars, based on 1 article reviews
space ranger aligned visium hd data - by Bioz Stars, 2026-07
86/100 stars
  Buy from Supplier

Image Search Results


(a) sST: Visium HD mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).

Journal: bioRxiv

Article Title: MilliMap: interactive closed-loop analysis for spatial omics

doi: 10.64898/2026.05.01.722104

Figure Lengend Snippet: (a) sST: Visium HD mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).

Article Snippet: The Visium HD Mouse Brain dataset (FFPE; C57BL/6; Space Ranger v3.0.0) is available from 10x Genomics at https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-of-mouse-brain-he , licensed under CC BY 4.0.

Techniques: Expressing, Quantitative Proteomics